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SUMMARY:Advancing simulation\, analysis and prediction of complex chemical
  systems using modern chemical graph theory and computational topology
DTSTART;VALUE=DATE:20250716
DTSTAMP:20260405T215027Z
UID:346643075760943e2ac13d07e0324891b0f18014744bfd6f48a340ae
CATEGORIES:Conferences - Seminars
DESCRIPTION:You can apply to participate and find all the relevant informa
 tion (speakers\, abstracts\, program\,...) on the event website: https://
 www.cecam.org/workshop-details/advancing-simulation-analysis-and-predictio
 n-of-complex-chemical-systems-using-modern-chemical-graph-theory-and-compu
 tational-topology-1389.\n\nRegistration is required to attend the full eve
 nt\, take part in the social activities and present a poster at the poster
  session (if any).  However\, the EPFL community is welcome to attend
  specific lectures without registration if the topic is of interest to t
 heir research. Do not hesitate to contact the CECAM Event Manager if you h
 ave any question.\n\nDescription\nThe simulation of complex chemical\, mat
 erials and biophysical systems is increasingly reliant upon the transfer o
 f information across length and timescales to both accelerate simulation t
 ime as well as interpret collective phenomena that derive from many body i
 nteractions beyond the scale of electrons. Ultimately\, it is desirable t
 o extend many-body theories beyond traditional domains of electronic struc
 ture theory and into complex condensed matter systems\, where propagating 
 system states in time must be able to self-consistently account for many-b
 ody effects (described by different granularities of information). This p
 resents a unique grand challenge for the computational chemistry community
  and will require interdisciplinary collaboration with the mathematics and
  computer science communities – where multidimensional data analysis ins
 pired by machine learning and AI is rapidly advancing the mathematical lan
 guages associated with the shape of data\, specifically the mathematical l
 anguages of graph theory and computational topology.\n \nThe focus of thi
 s CECAM workshop will be to bring together computational chemists\, materi
 als scientists and biophysicists with leaders in the mathematics of graphs
  and computational topology. The workshop will educate these communities\,
  foster collaboration and inspire development of both applied and fundamen
 tal computational methods in chemistry. We will focus upon each scale of i
 nformation relevant to computational chemistry (from electrons to the meso
 scale) and identify opportunities where graph theory and topology can help
  in method development and information transfer to accelerate interdiscipl
 inary innovation.\n \nFor example\, at the smallest scale of electrons\, 
 continued development is needed for reduced-complexity electronic structur
 e methods (e.g.\, through effective Hamiltonians). There\, fundamental que
 stions remain about how to achieve the best parametrization\, what optim
 ization methods to employ\, how electronic data is represented\, and perh
 aps most importantly – how to maintain physical transparency through ste
 p-by-step coarse-graining that may use nonphysics neural network structure
 s to represent the data from electronic structure calculations.  As che
 mical complexity grows via molecular degrees of freedom\, chemical composi
 tion\, or diversity of intermolecular interactions\, the breadth of config
 uration ensembles can increase significantly - reflecting an increasingly 
 rugged underlying potential energy landscape. Thus\, there is need to char
 acterize and predict spatial heterogeneities\, collective dynamics and the
  relation to energy landscape topology. This is important not only in samp
 ling\, but also for predictive models that seek to understand the relation
 ships between physicochemical properties and the configurational phase spa
 ce. Fundamentally\, such chemical insight can be greatly accelerated throu
 gh mathematical notions of distance (e.g.\, distances to compare the preci
 se graph combinatorial structure). This may include summaries of the spec
 tral structures of graph representations of the molecular system in combin
 ation with the energy landscape - such as the spectra of the graph Laplac
 e operator or the diffusion operator associated with input graphs. Recent 
 advancements in topological data analysis also provide new ways to compare
  graph representation of high-dimensional data via persistent homology\, t
 hat have the potential to be adapted for chemical systems.\n \nThrough an
  organizational structure that combines use-case scenarios\, grand-challen
 ge talks and methodological and software tutorials (alongside poster prese
 ntations and roundtable discussions)\, this CECAM workshop will set the st
 age for increased collaboration between the applied math and computational
  sciences.\n\nReferences\n[1] A. Clark\, H. Adams\, R. Hernandez\, A. Kryl
 ov\, A. Niklasson\, S. Sarupria\, Y. Wang\, S. Wild\, Q. Yang\, ACS Cent. 
 Sci.\, 7\, 1271-1287 (2021)\n[2] A. Clark\, P. Dral\, I. Tamblyn\, O. Isa
 yev\, Phys. Chem. Chem. Phys.\, 25\, 22563-22564 (2023)\n[3] Energy Lands
 capes: Applications to Clusters\, Biomolecules and Glasses\, Cambridge Mol
 ecular Science\, Cambridge UK (2004).\n[4] Y. Aboulfath\, S. Bougueroua\, 
 A. Cimas\, D. Barth\, M. Gaigeot\, J. Chem. Theory Comput.\, 20\, 1019-10
 35 (2024)\n[5] M. Witman\, S. Ling\, P. Boyd\, S. Barthel\, M. Haranczyk\,
  B. Slater\, B. Smit\, ACS Cent. Sci.\, 4\, 235-245 (2018)\n[6] T. Easley
 \, K. Freese\, E. Munch\, J. Bijsterbosch\, Comparing representations of h
 igh-dimensional data with persistent homology: a case study in neuroimagin
 g\, arXiv:2306.13802
LOCATION:BCH 2103 https://plan.epfl.ch/?room==BCH%202103
STATUS:CONFIRMED
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