Imaging Lunch: Introduction to ImageJ/Fiji for Image Analysis and Macros Scripting
Event details
| Date | 24.09.2025 |
| Hour | 11:00 › 14:00 |
| Speaker | Dr Daniel Sage |
| Location | |
| Category | Conferences - Seminars |
| Event Language | English |
Abstract
In this workshop, we will present ImageJ/Fiji, the most widely used platform for image processing and analysis in the scientific community. ImageJ/Fiji is particularly well-suited for handling and analyzing multidimensional scientific images. Its open architecture supports thousands of plugins, making it a versatile platform for addressing a wide range of image analysis problems across various scientific fields. The built-in Macro mode allows users to automate repetitive processing tasks using simple customizable scripts.
Program
11:00-12:00: Explore the Fiji interface, main commands, and key plugins. Live demonstrations, usage tips, and hands-on.
13:00-14:00: Learn how to write basic macros to automate image handling and simple image-analysis through examples
Preparation:
Install Fiji in advance on your laptop to be ready to participate in the hands-on exercises. Download the latest stable version: https://fiji.sc/
Learning Objectives
Registration required
About the Imaging Lunches: Once per month, the EPFL Center for Imaging organises an event dedicated to all PhD students and postdocs working with/in imaging. Discuss the latest advances in imaging. Connect with imaging peers. Learn about popular imaging tools!
In this workshop, we will present ImageJ/Fiji, the most widely used platform for image processing and analysis in the scientific community. ImageJ/Fiji is particularly well-suited for handling and analyzing multidimensional scientific images. Its open architecture supports thousands of plugins, making it a versatile platform for addressing a wide range of image analysis problems across various scientific fields. The built-in Macro mode allows users to automate repetitive processing tasks using simple customizable scripts.
Program
11:00-12:00: Explore the Fiji interface, main commands, and key plugins. Live demonstrations, usage tips, and hands-on.
13:00-14:00: Learn how to write basic macros to automate image handling and simple image-analysis through examples
Preparation:
Install Fiji in advance on your laptop to be ready to participate in the hands-on exercises. Download the latest stable version: https://fiji.sc/
Learning Objectives
- Use essential ImageJ/Fiji commands and plugins for common image analysis tasks.
- Develop and run basic macros to automate image processing workflows.
Registration required
About the Imaging Lunches: Once per month, the EPFL Center for Imaging organises an event dedicated to all PhD students and postdocs working with/in imaging. Discuss the latest advances in imaging. Connect with imaging peers. Learn about popular imaging tools!
Links
Practical information
- General public
- Free
Organizer
- EPFL Center for Imaging
Contact
- Melissa Caloz, melissa.caloz@epfl.ch