Imaging Lunch: Data Analysis with Segment Anything for Microscopy
Event details
| Date | 31.03.2026 |
| Hour | 10:00 › 13:00 |
| Speaker | Constantin Pape, Göttingen University |
| Location | |
| Category | Conferences - Seminars |
| Event Language | English |
Registration
This workshop will teach how to apply Segment Anything for Microscopy to your own data.
To this end, we will explore the different capabilities of the method for interactive and automatic segmentation in (volumetric) image data for light and electron microscopy. We will first test the tool on sample data and then try it out on the data participants bring to the workshop. Finally, we will cover advanced applications, such as (interactively) segmenting large amounts of data in a high-throughput fashion or fine-tuning models for specific analysis tasks.
This talk will be given by Prof. Constantin Pape, head of the Computational Cell Analytics research group at the Institute of Computer Science at Georg August University Göttingen and a member of the Campus Institute for Data Science (CIDAS). His research focuses on image processing methods with applications in biology and medicine. Prior to joining Göttingen, he was a postdoctoral fellow at EMBL Heidelberg. His main research interests include machine learning and deep learning, which he applies primarily to microscopy image analysis. He also works on the processing and visualization of large-scale image datasets. His work is strongly interdisciplinary, involving close collaboration with biologists and medical professionals.
Registration required
About the Imaging Lunches: Once per month, the EPFL Center for Imaging organises an event dedicated to all PhD students and postdocs working with/in imaging. Discuss the latest advances in imaging. Connect with imaging peers. Learn about popular imaging tools!
This workshop will teach how to apply Segment Anything for Microscopy to your own data.
To this end, we will explore the different capabilities of the method for interactive and automatic segmentation in (volumetric) image data for light and electron microscopy. We will first test the tool on sample data and then try it out on the data participants bring to the workshop. Finally, we will cover advanced applications, such as (interactively) segmenting large amounts of data in a high-throughput fashion or fine-tuning models for specific analysis tasks.
This talk will be given by Prof. Constantin Pape, head of the Computational Cell Analytics research group at the Institute of Computer Science at Georg August University Göttingen and a member of the Campus Institute for Data Science (CIDAS). His research focuses on image processing methods with applications in biology and medicine. Prior to joining Göttingen, he was a postdoctoral fellow at EMBL Heidelberg. His main research interests include machine learning and deep learning, which he applies primarily to microscopy image analysis. He also works on the processing and visualization of large-scale image datasets. His work is strongly interdisciplinary, involving close collaboration with biologists and medical professionals.
Registration required
About the Imaging Lunches: Once per month, the EPFL Center for Imaging organises an event dedicated to all PhD students and postdocs working with/in imaging. Discuss the latest advances in imaging. Connect with imaging peers. Learn about popular imaging tools!
Links
Practical information
- General public
- Free