Imaging Lunch: Data Analysis with Segment Anything for Microscopy
Event details
| Date | 31.03.2026 |
| Hour | 10:00 › 13:00 |
| Speaker | Constantin Pape, Göttingen University |
| Location | |
| Category | Conferences - Seminars |
| Event Language | English |
Registration
Abstract:
This workshop will teach how to apply Segment Anything for Microscopy to your own data.
To this end, we will explore the different capabilities of the method for interactive and automatic segmentation
in (volumetric) image data for light and electron microscopy. We will first test the tool on sample data and then
try it out on the data participants bring to the workshop. Finally, we will cover advanced applications, such as
(interactively) segmenting large amounts of data in a high-throughput fashion or fine-tuning models for specific analysis tasks.
With Prof. Constantin Pape, head of the Computational Cell Analytics research group at the Institute of Computer Science in Georg August University Göttingen. He is also a member of the Campus Institute for Data Science (CIDAS). He conducts researches into image processing methods with applications in biology and medicine. Before working at Göttingen, Mr. Pape was a postdoctoral fellow at EMBL Heidelberg. His research interests are machine learning and deep learning, applying these methods primarily in image processing for microscopy. He also works on the processing and visualization of large image data sets. His work focuses on interdisciplinary projects with biologists and medical professionals.
Registration required
About the Imaging Lunches: Once per month, the EPFL Center for Imaging organises an event dedicated to all PhD students and postdocs working with/in imaging. Discuss the latest advances in imaging. Connect with imaging peers. Learn about popular imaging tools!
Abstract:
This workshop will teach how to apply Segment Anything for Microscopy to your own data.
To this end, we will explore the different capabilities of the method for interactive and automatic segmentation
in (volumetric) image data for light and electron microscopy. We will first test the tool on sample data and then
try it out on the data participants bring to the workshop. Finally, we will cover advanced applications, such as
(interactively) segmenting large amounts of data in a high-throughput fashion or fine-tuning models for specific analysis tasks.
With Prof. Constantin Pape, head of the Computational Cell Analytics research group at the Institute of Computer Science in Georg August University Göttingen. He is also a member of the Campus Institute for Data Science (CIDAS). He conducts researches into image processing methods with applications in biology and medicine. Before working at Göttingen, Mr. Pape was a postdoctoral fellow at EMBL Heidelberg. His research interests are machine learning and deep learning, applying these methods primarily in image processing for microscopy. He also works on the processing and visualization of large image data sets. His work focuses on interdisciplinary projects with biologists and medical professionals.
Registration required
About the Imaging Lunches: Once per month, the EPFL Center for Imaging organises an event dedicated to all PhD students and postdocs working with/in imaging. Discuss the latest advances in imaging. Connect with imaging peers. Learn about popular imaging tools!
Practical information
- General public
- Free